We implement a parallel algorithm with the advantage of MPI (Message Passing Interface) to speed up the rapid relaxation inversion for 3D magnetotelluric data. We test the parallel rapid relaxation algorithm with synthetic and real data. The execution efficiency of the algorithm for several different situations is also compared. The results indicate that the parallel rapid relaxation algorithm for 3D magnetotelluric inversion is effective. This parallel algorithm implemented on a common PC promotes the practical application of 3D magnetotelluric inversion and can be suitable for the other geophysical 3D modeling and inversion.