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武汉东湖圆形盘肠溞种群遗传结构分析被引量:4
2013年
为了评估人工堤坝分隔对武汉东湖浮游动物种群遗传结构的影响,以细胞色素氧化酶亚基Ⅰ(mitochondrial cytochrome coxidase subunitⅠ,COⅠ)基因为分子标记,通过PCR扩增和DNA测序技术并结合GenBank数据库中已有的相关序列,对武汉东湖圆形盘肠溞(Chydorus sphaericus)种群遗传多样性进行了分析。结果显示:7个样点采集的圆形盘肠溞并没有分为不同的类群,全局检验和种群间两两差异检验均显示7个圆形盘肠溞类群没有显著的遗传差异。构建的邻接树显示武汉东湖的圆形盘肠溞COⅠ基因聚为一枝,除加拿大育空地区Kookatsoon湖与武汉东湖的部分圆形盘肠溞COⅠ基因聚为一枝外,其他地区的圆形盘肠溞COⅠ基因都分别聚为不同的枝。对圆形盘肠溞COⅠ基因序列两两距离与样点间的地理距离进行相关分析显示,不论是东湖内的小空间尺度还是更大尺度上的圆形盘肠溞COⅠ基因都存在序列相似性随地理距离增加而降低("距离-衰减"模式),说明圆形盘肠溞存在分布限制。研究结果表明武汉东湖50年前修建的人工堤坝并未对武汉东湖圆形盘肠溞的种群遗传结构造成显著影响。
胡红娟颜庆云倪加加余育和李学梅王纯
关键词:CO
凝胶条带内DNA回收测序评估DGGE可靠性被引量:1
2014年
为了评估DGGE的可靠性,对DGGE条带中回收的DNA片段进行了测序比较分析,并引入了DGGE可靠性指数的概念评价其可靠性。结果显示同一条DGGE条带回收的DNA来自同一属的概率为64.7%,相同位置的DGGE条带可以被认为是同一OTU;不同的DGGE条带回收到类似的DNA序列(16S rDNA V3区差异小于4 bp)的概率为10.5%;DGGE可靠性指数为74.8%。以上结果表明尽管DGGE技术与理论预期存在一定的差距,但是DGGE技术基本能够反映微生物群落的多样性。
倪加加余育和
关键词:DNA指纹变性梯度凝胶电泳微生物群落结构
Fish gut microecosystem: a model for detecting spatial pattern of microorganisms被引量:2
2014年
The spatial distribution pattern of organisms is a basic issue in understanding the mechanisms of community assembly. Although the spatial distributions of animals and plants have been well studied,those of microorganisms are still being debated. In this study, we used a fi sh gut microecosystem to detect the spatial pattern of microbes, because it can provide a relatively unifi ed and stable environment. Results suggest that the turnover of intestinal bacterial assemblages showed a weak but highly signifi cant negative correlation between similarity and distances in the microbial community, in respect of both grass carp intestinal loci distances and the geographical distance between fi sh sampling sites. Our results also suggest that intestinal bacterial assemblages responded to differences within the external environment and within different parts of the fi sh themselves. These results show that some, or possibly all, microbes are restricted in their distribution and that environmental factors are also important infl uences on the structure of intestinal bacterial assemblages. The fi sh gut microecosystem is useful in promoting study of the spatial distribution patterns of microorganisms.
倪加加颜庆云余育和张堂林
关键词:BETA-DIVERSITY
Spatiotemporal pattern of bacterioplankton in Donghu Lake被引量:4
2014年
Bacterioplankton play key roles in the biogeochemical cycle and in organic contaminant degradation. The species richness and abundance of bacterial subgroups are generally distinct from each other, and this is attributed to their different functions in aquatic ecosystems. The spatiotemporal variations of eight phylogenetic subgroups (Actinobacteria, Bacteroidetes, Cyanobacteria, Firmicutes, Planctomycetes, alpha-, beta-, and gamma-Proteobacteria) derived from Donghu Lake were investigated using PCR-DGGE fingerprinting, to explore their responses to environmental factors. Results indicate that Actinobacteria and beta-Proteobacteria were the two largest bacterial subgroups detected. These two groups and Bacteroidetes showed clear seasonal patterns in composition of the operational taxonomic unit. Results also suggest that the bacterioplankton subgroups in Donghu Lake were significantly correlated with different environmental factors. In brief, the total nitrogen was one of the major factors regulating all the bacterioplankton except for Actinobacteria. However, total phosphorus, another important eutrophication factor, contributed to the two largest bacterial groups (Actinobacteria and beta-Proteobacteria), as well as to the Cyanobacteria and Firmicutes. Therefore, the responses of bacterioplankton subgroups to environmental factors were different, and this should be attributed to the differences in the fimctions of different groups.
张翔颜庆云余育和代梨梨
关键词:BACTERIOPLANKTONPCR-DGGE
不同月份养殖草鱼幼鱼消化道微生物群落动态变化研究被引量:5
2013年
为了评估草鱼消化道微生物群落结构在草鱼食性转化后的变动情况,实验对食性转换完成后的草鱼消化道微生物群落结构进行了PCR-DGGE分析。结果显示,不同月份采集草鱼消化道微生物群落结构存在明显差异(Monte Carlo检验,A:F=3.41,P=0.002;B:F=3.58,P=0.002),而被广泛认为影响宿主消化道微生物群落结构的宿主大小、丰满度等因素则在短期内并没有发现会对草鱼消化道微生物群落结构产生影响。实验表明,短期内环境因素可能是造成草鱼消化道微生物群落结构变动的主要因素。本实验结果将为深入阐述草鱼消化道微生物群落结构的变化规律、消化道益生菌的作用机理、消化道微生物群落结构变动与草鱼疾病的关系等问题积累基础材料。
倪加加余育和
关键词:草鱼变性梯度凝胶电泳
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