This paper deals with the problem of cooperative attitude tracking with time-varying communication delays as well as the delays between inter-synchronization control parts and self-tracking control parts in the spacecraft formation flying. First, we present the attitude synchronization tracking control algorithms and analyze the sufficient delay-dependent stability condition with the choice of a Lyapunov function when the angular velocity can be measured. More specifically, a class of linear filters is developed to derive an output feedback control law without having direct information of the angular velocity, which is significant for practical applications with low-cost configurations of spacecraft. Using a well-chosen Lyapunov-Krasovskii function, it is proven that the presented control law can make the spacecraft formation attitude tracking system synchronous and achieve ex- ponential stability, in the face of model uncertainties, as well as non-uniform time-varying delays in communication links and different control parts. Finally, simulation results are presented to demonstrate the effectiveness of the proposed control schemes.