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上海市科委重大科技攻关项目(073205109)

作品数:2 被引量:2H指数:1
相关作者:陈晓武施志仪程千千更多>>
相关机构:上海海洋大学上海水产大学更多>>
发文基金:上海市科委重大科技攻关项目上海市教育委员会重点学科基金博士科研启动基金更多>>
相关领域:生物学更多>>

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Full-length cDNA Cloning and Tissues Expression Analysis of Ferritin Gene from Acipenser sinensis被引量:2
2009年
According to the conserved sequence of the ferritin gene, a homologous sequence was obtained from the EST database through a BLAST search against the GenBank database. This sequence was amplified with the method of RT-PCR, false sequencing was corrected, and full length eDNA of the ferritin subunit from the Chinese sturgeon was obtained. After being submitted to the GenBank database, the sequence accession number EU348782 was assigned. With the length of 896 bp, this eDNA includes entire coding regions of 53 lbp, which encodes 176 amino acids (aa). The molecular weight was predicted to be 20339.9Mr and the theoretical isoelectric point 5.66. It shares 82.9% protein sequence homology with the ferritin of the Atlantic salmon. This gene is expressed in many organs of the Chinese sturgeon, for example, the liver, pancreas, muscle, brain, heart and gastric mucosa. The highest expression level was found in the pancreas and the heart, while the muscular tissue showed the lowest. Homology modeling was used to predict the 3-D structure of the protein, which included 5 alpha helices and 10 turns. The ferritin protein structure could be overlapped and showed high similarity with that of human, flog and bacteria. It was revealed that this kind of ferritin was highly conserved in structure and function.
陈晓武施志仪程千千
关键词:FERRITINBIOINFORMATICS
中华鲟YY肽基因电子克隆表达与生物信息学分析
2008年
以日本鳗鲡的PYY基因cDNA序列为信息探针,搜索中华鲟EST文库,得到中华鲟PYY的EST序列,经过生物信息学分析。结果表明,此cDNA序列包含完整的开放读码框,所编码的蛋白质包含97个氨基酸,前28个氨基酸为信号肽,分子量为11.03kD,理论等电点为5.54。该蛋白序列和牙鲆、河豚以及斑马鱼的PYY肽同源性较高。其中36个氨基酸构成PAH结构域,由一个α螺旋结构和一个无规则卷曲区组成。包含中华鲟PYY在内的139条真核生物神经肽Y蛋白质序列比对结果显示,有6个氨基酸位点高度保守,其中有5个氨基酸位于α螺旋上,另外1个脯氨酸位于无规则卷曲区,提示α螺旋也可能起到重要作用。
陈晓武施志仪
关键词:中华鲟生物信息学
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