[Objective] The aim was to investigate and reveal effect of measurement time on emission flux of CO2 and N2O to ensure the optimum time of emission flux, in order to provide scientific reference for emission reduction of greenhouse gas in black soil region. [Method] Based on experiment of long-term fertilizer location in black soil region, the paper studied on daily dynamic variation of CO2 and N2O discharge in 3 key growth periods （booting stage, grain-filling stage and mature stage） to reveal differences of CO2 and N2O emission flux in different times. [Result] Daily variations of CO2 and N2O emission flux were large, from 205 mg/（m2·h） to 552 mg/（m2·h） for CO2 and from 51 h to 295 μg/（m2·h） for N2O. Trend of CO2 discharge in different growth times showed a unimodal curve, and the peak was at noon of 12：00 and the peak valley was at 3：00 am; discharge of N2O was small in day time at booting stage and large at night. Regardless of rice growth period effect on CO2 and N2O emission flux, representative time of CO2 discharge was 6：00-8：00 or 16：00-21：00; and time of N2O was 8：00-10：00 or 16：00-21：00; if CO2 and N2O emission fluxes were measured simultaneously, the optimum time was 16：00-18：00; if the measurement was started during 9：00-12：00, correction coefficients of CO2 and N2O were 0.81 and 0.90, respectively. [Conclusion] The result provided scientific reference for reduction of greenhouse gas emission in black soil region.
